Please use this identifier to cite or link to this item: https://hdl.handle.net/11499/51168
Title: In Silico Integrated Analysis of Genomic, Transcriptomic, and Proteomic Data Reveals QTL-Specific Genes for Bacterial Canker Resistance in Tomato (Solanum lycopersicum L.)
Authors: Celik, İbrahim
Keywords: Clavibacter michiganensis subsp
michiganensis
disease resistance
QTL mapping
candidate gene identification
wild tomato species
Michiganensis Subsp Michiganensis
Marker-Assisted Selection
Hirsutum La407
2 Loci
Expression
Ethylene
Software
Confer
Publisher: MDPI
Abstract: Bacterial canker of tomato, caused by Clavibacter michiganensis subsp. michiganensis (Cmm), is a devasting disease that leads to significant yield losses. Although QTLs originating from three wild species (Solanum arcanum, S. habrochaites, and S. pimpinellifolium) were identified, none of the QTLs was annotated for candidate gene identification. In the present study, a QTL-based physical map was constructed to reveal the meta-QTLs for Cmm resistance. As a result, seven major QTLs were mapped. Functional annotation of QTLs revealed 48 candidate genes. Additionally, experimentally validated Cmm resistance-related genes based on transcriptomic and proteomic studies were mapped in the genome and 25 genes were found to be located in the QTL regions. The present study is the first report to construct a physical map for Cmm resistance QTLs and identify QTL-specific candidate genes. The candidate genes identified in the present study are valuable targets for fine mapping and developing markers for marker-assisted selection in tomatoes for Cmm resistance breeding.
URI: https://doi.org/10.3390/cimb45020090
https://hdl.handle.net/11499/51168
ISSN: 1467-3037
1467-3045
Appears in Collections:PubMed İndeksli Yayınlar Koleksiyonu / PubMed Indexed Publications Collection
Scopus İndeksli Yayınlar Koleksiyonu / Scopus Indexed Publications Collection
WoS İndeksli Yayınlar Koleksiyonu / WoS Indexed Publications Collection
Çal Meslek Yüksekokulu Koleksiyonu

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